Fluoromatics Software - Tools that shape the face of photosynthesis research

Akoyunoglou G (1981) Assembly of functional components in chloroplast photosynthetic membranes. In: Akoyunoglou G (ed) Photosynthesis, Vol V, Chloroplast Development, pp 353--366. Balaban International Science Services, Philadelphia, PA

Briantais JM, Vernotte C, Krause GH and Weiss E (1986) Chlorophyll a fluorescence of higher plants: chloroplasts and leaves. In: Govindjee, Amesz J and Fork DC (eds) Light Emission by Plants and Bacteria, pp. 539--583. Academic Press, New York

Butler WL (1978) Energy distribution in the photochemical apparatus of photosynthesis. Ann Rev Plant Physiol 29: 345--378

Butler WL and Strasser RJ (1977a) Tripartite model for the photochemical apparatus of green plant photosynthesis. Proc Natl Acad Sci USA 74: 3382--3385

Butler WL and Strasser RJ (1977b) Effect of divalent cations on energy coupling between the light-harvesting chlorophyll a/b complex and PSII. In: Hall DA, Coombs J and Goodwin TW (eds) Photosynthesis ’77, pp 11--20. The Biochemical Society, London

Clark AJ, Landolt W, Bucher J and Strasser RJ (1998) The response of Fagus sylvatica to elevated CO and ozone probed by the JIP-test based on the chlorophyll fluorescence rise OJIP. In: De Kok LJ and Stulen I (eds) Responses of Plant Metabolism to Air Pollution and Global Change, pp 283--286. Backhuys Publishers, Leiden, The Netherlands

Clark AJ, Landolt W, Bucher J and Strasser RJ (2000) Beech (Fagus sylvatica) response to ozone exposure assessed with a chlorophyll a fluorescence performance index. Environmental Pollution 109: 501--507

Cleland RE, Melis A and Neale PJ (1986) Mechanism of photoinhibition: photochemical reaction center inactivation in system II of chloroplast. Photosynthesis Res 9: 79--88

Dau H (1994) Molecular mechanisms and quantitative models of variable photosystem II fluorescence. Photochem Photobiol 60: 1--23

Delosme R (1967) Etude de l’induction de fluorescence des algues vertes et des chloroplastes au debut d’une illumination intense. Biochim Biophys Acta 143: 108--128

Diner BA and Babcock GT (1996) Structure, dynamics, and energy conversion efficiency in photosystem II. In: Ort DR and Yokum CF (eds) Advances in Photosynthesis, Vol 4, Oxygenic Photosynthesis: The Light Reactions, pp 213--247. Kluwer Academic Publishers

Duysens LNM, Sweers HE (1963) Mechanism of two photochemical reactions in algae as studied by means of fluorescence. In: Japanese Society of Plant Physiologists (eds) Studies on Microalgae and Photosynthetic Bacteria, pp 353--372. University of Tokyo Press, Tokyo

Eichelmann H and Agu Laisk A (2000) Cooperation of photosystems II and I in leaves as analyzed by simultaneous measurements of chlorophyll fluorescence and transmittance at 800 nm. Plant Cell Physiol 41(2): 138--147

Genty B, Briantais J-M and Baker NR (1989) The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochim Biophys Acta 990: 87-92

Govindjee (1995) Sixty-three years since Kautsky: chlorophyll a fluorescence. Aust J Plant Physiol 22: 131--160

Gruszecki WI, Kernen P, Krupa Z. and Strasser RJ (1994) Involvement of xanthophyll pigments in regulation of light-driven excitation quenching in light-harvesting complex of Photosystem II. Biochim Biophys Acta 1188: 235--242

Guissé B, Srivastava A and Strasser RJ (1995a) The polyphasic rise of the chlorophyll a fluorescence (O-K-J-I-P) in heat-stressed leaves. Archs Sci Genève 48: 147--160

Guissé B, Srivastava A. and Strasser RJ (1995b) Effects of high temperature and water stress on the polyphasic chlorophyll a fluorescence transient of potato leaves. In: Mathis P (ed) Photosynthesis: from Light to Biosphere, Vol. IV, pp. 913--916, Kluwer Academic Publishers, The Netherlands

Havaux M, Greppin H and Strasser RJ (1991) Functioning of photosystems I and II in pea leaves exposed to heat stress in the presence or absence of light: Analysis using in-vivo fluorescence, absorbance and photoacoustic measurements. Planta 186: 88--98

Joliot A and Joliot P (1964) Etude cinétique de la réaction photochimique libérant l’oxygène au cours de la photosynthèse. CR Acad Sci Paris 258: 4622--4625

Karapetyan NV, Shubin VV and Strasser RJ (1999) Energy exchange between the chlorophyll antennae of monomeric subunits within the photosystem I trimeric complex of the cyanobacterium Spirulina. Photosynthesis Res 61: 291--301

Kautsky H and Hirsch A (1931) Neue Versuche zur Kohlensäureassimilation. Naturwissenschaften 19: 964

Ke B (2001) Photosynthesis: Photobiochemistry and Photobiophysics. In: Govindjee (ed) Advances in Photosynthesis, Vol 10. Kluwer Academic Publishers, Dordrecht/ Boston/London

Kitajima M and Butler WL (1975) Quenching of chlorophyll fluorescence and primary photochemistry in chloroplasts by dibromothymoquinone. Biochim Biophys Acta 376: 105--115

Klughammer C and Schreiber U (1994) An improved method, using saturating light pulses, for the determination of photosystem I quantum yield via P700absorbance changes at 830 nm. Planta 192: 261--268

Klughammer C and Schreiber U (1998) Measuring P700 absorbance changes in the near infrared spectral region with a dual wavelength pulse modulation system. In: Garab G (ed) Photosynthesis: Mechanisms and Effects, Vol V, pp —4360.Kluwer Academic Publishers, The Netherlands

Kok B and Hoch G (1961) Spectral changes in photosynthesis. In: McElroy MD and Glass B (eds) Light and Life, pp 376--416, John Hopkins Press, Baltimore, MD

Krause GH (1988) Photoinhibition of photosynthesis. An evaluation of damaging and protective mechanisms. Physiol Plantarum 74: 566--574

Krause GH and Weiss E (1991) Chlorophyll fluorescence and photosynthesis: the basics. Annu Rev Plant Physiol Plant Mol Biol 42: 313--349

Krause GH, Somersalo S, Zumbusch E, Weyers B and Laasch H (1990) On the mechanism of photoinhibition in chloroplasts. Relationship between changes in fluorescence and activity of photosystem II. J Plant Physiol 136: 472--479

Krüger GHJ, Tsimilli-Michael M and Strasser RJ (1997) Light stress provokes plastic and elastic modifications in structure and function of photosystem II in camellia leaves. Physiol Plantarum 101: 265--277

Lavergne J and Trissl H-W (1995) Theory of fluorescence induction in photosystem II: Derivation of analytical expressions in a model including exciton-radical-pair equilibrium and restricted energy transfer between photosynthetic units. Biophys J 68: 2474--2492

Lazár D (1999) Chlorophyll a fluorescence induction. Biochim Biophys Acta 1412: 1--28

Lazár D and Ilík P (1997) High-temperature induced chlorophyll fluorescence changes in barley leaves. Comparison of the critical temperatures determined from fluorescence induction and from fluorescence temperature curves. Plant Sci 124: 159--164

Lazár D, Ilík P and Nauš J (1997a) An appearance of K-peak in fluorescence induction depends on the acclimation of barley leaves to higher temperatures. J Luminesc 72--74: 595--596

Lazár D, Nauš J, Matoušková M and Flašarová M (1997b) Mathematical modelling of changes in chlorophyll fluorescence inductiion caused by herbicides. Pestic Biochem Physiol 57: 200--210

Ley AC and Butler WL (1977) The distribution of excitation energy between photosystem I and photosystem II in Porphyridium cruentum. Photosynthetic Organelles--Special Issue of Plant and Cell Physiol, 22--46

Lombard F and Strasser RJ (1984) Evidence for spill over changes during state-1 to state-2 transition in green leaves. In: Sybesma C (ed) Advances in Photosynthesis Research III, pp 271--274. Martinus Nijhoff/Dr W Junk Publishers, The Hague

Munday and Govindjee (1969) Light induced changes in the fluorescence yield of chlorophyll a in vivo. III. The dip and the peak in the fluorescence transient of Chlorella pyrenoidosa. Biophys J 9: 1--21

Neubauer C and Schreiber U (1987) The polyphasic rise of chlorophyll fluorescence upon onset of strong continuous illumination: 1. Saturation characteristics and partial control by the photosystem II acceptor side. Z Naturforsch 42c: 1246--1254

Ouzounidou G, Moustakas M and Strasser RJ (1997) Sites of action of copper in the photosynthetic apparatus of maize leaves: Kinetic analysis of chlorophyll fluorescence, oxygen evolution, absorption changes and thermal dissipation as monitored by photoacoustic signals. Aust J Plant Physiol 24: 81--90

Paillotin G (1976) Movement of excitations in the photosynthetic domains of photosystem II. J theor Biol 58: 237--252

Papageorgiou G (1975) Chlorophyll fluorescence: an intrinsic probe of photosynthesis. In: Govindjee (ed) Bioenergetics of Photosynthesis, pp 319--371. Academic Press, New York

Schmitz P, Maldonado-Rodriguez R and Strasser RJ (2001) Evaluation of the nodulated status of Vigna unguiculata probed by the JIP-test based on the chlorophyll a fluorescence rise. In: Proceedings of the XII International Congress in Photosynthesis, Brisbane-Australia (in press)

Schreiber U, Klughammer C and Neubauer C (1988) Measuring P700 absorbance changes around 830 nm with a new type of pulse modulation system. Z Naturforsch 43c: 686-698

Sironval C, Strasser RJ and Brouers M (1981) Equivalence entre la théorie des flux et la théorie des relations entre proportions de pigments pour la description de la répartition de l’ energie lumineuse absorbée par les membranes photoactives. Bull Acad Roy Belgique 67: 248--259

Sironval C, Strasser RJ and Brouers M (1984) The bioenergetic description of light energy migration in photoactive membranes; equivalence between the theory of the energy fluxes and the theory of the proportion of pigments forms to total pigments. In:

Sironval C and Brouers M (eds) Protochlorophyllide Reduction and Greening, pp 307--316. Martinus Nijhoff/Dr W. Junk Publishers, The Hague/ Boston/Lancaster

Srivastava A and Strasser RJ (1995) How do land plants respond to stress temperature and stress light? Archs Sci Genève 48: 135--145

Srivastava A and Strasser RJ (1996) Stress and stress management of land plants during a regular day. J Plant Physiol 148: 445--455

Srivastava A and Strasser RJ (1997) Constructive and destructive actions of light on the photosynthetic apparatus. J Sci Ind Res 56: 133--148

Srivastava A, Greppin H and Strasser RJ (1995) Acclimation of land plants to diurnal changes in temperature and light. In: Mathis P (ed) Photosynthesis: from Light to Biosphere, Vol. IV, pp. 909--912. Kluwer Academic Publishers, The Netherlands

Srivastava A, Guisse B, Greppin H and Strasser RJ (1997) Regulation of antenna structure and electron transport in PSII of Pisum sativum under elevated temperature probed by the fast polyphasic chlorophyll a fluorescence transient OKJIP. Biochim Biophys Acta 1320: 95--106

Srivastava A, Strasser RJ and Govindjee (1999) Greening of peas: parallel measurements of 77 K emission spectra, OJIP chlorophyll a fluorescence transient, period four oscillation of the initial fluorescence level, delayed light emission, and P700*. Photosynthetica 3: 365--392

Stirbet AD and Strasser RJ (1995) Numerical simulation of the fluorescence induction in plants. Archs Sci Genève 48: 41--60

Stirbet AD and Strasser RJ (1996) Numerical simulation of the in vivo fluorescence in plants. Mathematics and Computers in Simulation 42: 245--253

Stirbet AD and Strasser RJ (1998) Fast recording of chlorophyll a fluorescence, modelling and numerical simulation as a tool to probe the interaction of living systems with our planet. In: Greppin H, Degli Agosti R and Penel C (eds) Coaction Between Living System and Planet, pp 101--115. University of Geneva

Stirbet AD and Strasser RJ (2001) The possible role of pheophytin in the fast fluorescence rise OKJIP. In: Proceedings of the XII International Congress in Photosynthesis, Brisbane-Australia (in press)

Stirbet AD, Govindjee, Strasser BJ and Strasser RJ (1998) Chlorophyll a fluorescence induction in higher plants: Modelling and numerical simulation. J theor Biol 193: 131--151

Stirbet AD, Srivastava A and Strasser RJ (1998) The energetic connectivity of PSII centres in higher plants probed in vivo by the fast fluorescence rise O-J-I-P and numerical simulations. In: Garab G (ed) Photosynthesis: Mechanisms and Effects, Vol V, pp. 4317--4320. Kluwer Academic Publishers, The Netherlands

Stirbet AD, Rosenau Ph, Ströder AC and Strasser RJ (2001) Parameter optimisation of fast chlorophyll fluorescence induction model. Mathematics and Computer in Simulations 56: 443--450

Strasser BJ (1997) Donor side capacity of photosystem II probed by chlorophyll a fluorescence transients. Photosynthesis Res 52: 147--155

Strasser BJ and Strasser RJ (1995) Measuring fast fluorescence transients to address environmental questions: The JIP-test. In: Mathis P (ed) Photosynthesis: from Light to Biosphere, Vol V, pp 977--980. Kluwer Academic Publishers, The Netherlands

Strasser BJ and Strasser RJ (1998) Oscillations of the chlorophyll a fluorescence related to the S-states of the oxygen evolving complex. In: Garab G (ed) Photosynthesis: Mechanisms and Effects, Vol V, pp. 4325--4328. Kluwer Academic Publishers, The Netherlands

Strasser RJ (1978) The grouping model of plant photosynthesis. In: Akoyunoglou G (ed) Chloroplast Development, pp 513--524. Elsevier/North Holland

Strasser RJ (1980) Bacteriorhodopsin and its position in the blue light syndrome. In: Senger H (ed) The Blue Light Syndrome, pp 25--29. Springer-Verlag, Berlin

Strasser RJ (1981) The grouping model of plant photosynthesis: heterogeneity of photosynthetic units in thylakoids. In: Akoyunoglou G (ed) Photosynthesis III. Structure and Molecular Organisation of the Photosynthetic Apparatus, pp 727--737. Balaban International Science Services, Philadelphia, Pa

Strasser RJ (1984) The dynamics of the photoreduction of protochlorophyll(ide) into chlorophyll(ide). In: Sironval C and Brouers M (eds) Protochlorophyllide Reduction and Greening, pp. 317--327. Martinus Nijhoff/Dr W Junk Publishers, The Hague/Boston/Lancaster

Strasser RJ (1985) Dissipative Strukturen als Thermodynamischer Regelkreis des Photosyntheseapparates. Ber Deutsche Bot Ges Bd 98: 53--72

Strasser RJ (1986) Mono- bi- tri- and polypartite models in photosynthesis. Photosynthesis Res 10: 255--276

Strasser RJ (1988) A concept for stress and its application in remote sensing. In: Lichtenthaler HK (ed) Applications of Chlorophyll Fluorescence, pp 333--337. Kluwer Academic Publishers

Strasser RJ and Butler WL (1976) Energy transfer in the photochemical apparatus of flashed bean leaves. Biochim Biophys Acta 449: 412-419

Strasser RJ and Butler WL (1977a) Energy transfer and distribution of excitation energy in the photosynthetic apparatus of spinach chloroplasts. Biochim Biophys Acta 460: 230--238

Strasser RJ and Butler WL (1977b) The yield of energy transfer and the spectral distribution of excitation energy in the photochemical apparatus of flashed bean leaves. Biochim Biophys Acta 462: 295--306

Strasser RJ and Butler WL (1977c) Fluorescence emission spectra of photosystem I, photosystem II and the light-harvesting chlorophyll a/b complex of higher plants. Biochim Biophys Acta 462: 307—313

Strasser RJ and Butler WL (1977d)Energy coupling in the photosynthetic apparatus during development. pp. In: Hall DA, Coombs J and Goodwin TW (eds) Photosynthesis ’77, pp -535The Biochemical Society, London

Strasser RJ and Butler WL (1980) Interactions of flavins with cytochrome c and oxygen in excited artificial systems. In: Senger H (ed) The Blue Light Syndrome, pp 205-211. Springer--Verlag, Berlin

Strasser RJ and Govindjee (1992a) The F and the O-J-I-P fluorescence rise in higher plants and algae. In: Argyroudi-Akoyunoglou JH (ed) Regulation of Chloroplast Biogenesis, pp 423--426. Plenum Press, New York

Strasser RJ and Govindjee (1992b) On the O-J-I-P fluorescence transient in leaves and D1 mutants of Chlamydomonas Reinhardtii. In: Murata N (ed) Research in Photosynthesis, Vol. 4, pp 29--32. Kluwer Academic Publishers, Dordrecht

Strasser RJ and Greppin H (1981) Primary reactions of photochemistry in higher plants, In: Akoyunoglou G (ed) Photosynthesis III. Structure and Molecular Organisation of the Photosynthetic Apparatus, pp 717--726. Balaban International Science Services, Philadelphia, PA

Strasser RJ and Stirbet AD (1998) Heterogeneity of photosystem II probed by the numerically simulated chlorophyll a fluorescence rise (O-J-I-P). Mathematics and Computers in Simulation 48: 3--9

Strasser RJ and Stirbet AD (2001) Estimation of the energetic connectivity of PS II centres in plants using the fluorescence rise O-J-I-P. Fitting of experimental data to three different PS II models. Mathematics and Computers in Simulation 56: 451--461

Strasser RJ and Tsimilli-Michael M (1998) Activity and heterogeneity of PSII probed in vivo by the chlorophyll a fluorescence rise O-(K)-J-I-P. In: Garab G (ed) Photosynthesis: Mechanisms and Effects, Vol V, pp. 4321--4324. Kluwer Academic Publishers, The Netherlands

Strasser RJ and Tsimilli-Michael M (2001) Structure function relationship in the photosynthetic apparatus: a biophysical approach. In: Pardha Saradhi P (ed) Biophysical Processes in Living Systems, Chapter 16, pp 271 -- 303. Science Publishers, Inc. Enfield (NH), USA

Strasser RJ and Tsimilli-Michael M (2001) Stress in plants, from daily rhythm to global changes, detected and quantified by the JIP-Test. Chimie Nouvelle (SRC) (in press)

Strasser RJ, Schwarz B and Bucher JB (1987) Simultane Messung der Chlorophyll Fluoreszenz-Kinetik bei verschiedenen Wellenlängen als rasches Verfahren zur Frühdiagnose von Immissionsbelastungen an Waldbäumen: Ozoneinwirkungen auf Buchen und Pappeln. Eur J For Path 17 (3): 149--157

Strasser RJ, Schwarz B and Eggenberg P (1988) Fluorescence routine tests to describe the behaviour of a plant in its environment. In: Lichtenthaler HK (ed) Applications of Chlorophyll Fluorescence, pp 181--187. Kluwer Academic Publishers

Strasser RJ, Eggenberg P, Pfister K and Govindjee (1992) An equilibrium model for electron transfer in photosystem II acceptor complex: an application to Chlamydomonas reinhardtii cells of D1 mutants and those treated with formate. Archs Sci Genève 45: 207--224

Strasser RJ, Srivastava A and Govindjee (1995) Polyphasic chlorophyll a fluorescence transient in plants and cyanobacteria. Photochem Photobiol 61: 32--42

Strasser RJ, Tsimilli-Michael M and Greppin H (1997) How excitation energy distribution indicates the complexity of a developing and to the environment adapting photosynthetic apparatus. In: Greppin H, Penel C and Simon P (eds) Travelling Shot on Plant Development, pp 99--129. University of Geneva

Strasser RJ, Srivastava A and Tsimilli-Michael M (1999) Screening the vitality and photosynthetic activity of plants by the fluorescence transient. In: Behl RK, Punia MS and Lather BPS (eds) Crop Improvement for Food Security, pp. 72--115. SSARM, Hisar, India

Strasser RJ, Srivastava A and Tsimilli-Michael M (2000) The fluorescence transient as a tool to characterize and screen photosynthetic samples. In: Yunus M, Pathre U and Mohanty P (eds) Probing Photosynthesis: Mechanism, Regulation and Adaptation, Chapter 25, pp 443--480. Taylor and Francis, London, UK

Strasser RJ, Schansker G, Srivastava A and Govindjee (2001) Simultaneous measurement of photosystem I and photosystem II probed by modulated transmission at 820 nm and by chlorophyll a fluorescence in the sub ms to second time range. In: Proceedings of the XII International Congress in Photosynthesis, Brisbane-Australia (in press)

Trissl H-W and Lavergne J (1995) Fluorescence induction from photosystem II: analytical equations for the yields of photochemistry and fluorescence derived from analysis of a model including exciton--radical pair equilibrium and restricted energy transfer between photosynthetic units. Aust J Plant Physiol 22: 183--193

Tsala G and Strasser RJ (1984) Energy distribution changes during phosphorylation of the light-harvesting complex in thylakoids In: Sybesma C (ed) Advances in Photosynthesis Research III, pp 279--282. Martinus Nijhoff/Dr W Junk Publishers, The Hague

Michael M and Strasser RJ (2001) Mycorrhization as a stress adaptation procedure. In: Gianinazzi S, Haselwandter K, Schüepp H and Barea JM (eds) Mycorrhiza Technology in Agriculture: from Genes to Bioproducts. Birkhauser Basel, (in press)

Tsimilli-Michael M and Strasser RJ (2001) Fingerprints of climate changes on the photosynthetic apparatus’ behaviour, monitored by the JIP-test. In: Walther G-R, Burga CA and Edwards PJ (eds) “Fingerprints” of Climate Changes – Adapted Behaviour and Shifting Species Ranges, pp 229--247. Kluwer Academic/Plenum Publishers, New York and London

Tsimilli-Michael M, Krüger GHJ and Strasser RJ (1995) Suboptimality as driving force for adaptation: A study about the correlation of excitation light intensity and the dynamics of fluorescence emission in plants, In: Mathis P (ed) Photosynthesis: from Light to Biosphere, Vol V, pp 981--984. Kluwer Academic Publishers, The Netherlands

Tsimilli-Michael M, Krüger GHJ and Strasser RJ (1996) About the perpetual state changes in plants approaching harmony with their environment. Archs Sci Genève 49: 173--203

Tsimilli-Michael M, Pêcheux M and Strasser RJ (1998) Vitality and stress adaptation of the symbionts of coral reef and temperate foraminifers probed in hospite by the fluorescence kinetics O-J-I-P. Archs. Sci. Genève 51 (2): 1--36

Tsimilli-Michael M, Pêcheux M and Strasser RJ (1999) Light and heat stress adaptation of the symbionts of temperate and coral reef foraminifers probed in hospite by the chlorophyll a fluorescence kinetics O-J-I-P. Z Naturforsch 54C: 671--680

Tsimilli-Michael M, Eggenberg P, Biro B, Köves-Pechy K, Vörös I and Strasser RJ (2000) Synergistic and antagonistic effects of arbuscular mycorrhizal fungi and Azospirillum and Rhizobium nitrogen-fixers on the photosynthetic activity of alfalfa, probed by the chlorophyll a polyphasic fluorescence transient O-J-I-P. Applied Soil Ecology 15: 169--182

Van Rensburg L, Krüger GHJ, Eggenberg P and Strasser RJ (1996) Can screening criteria for drought resistance in Nicotiana tabacum L. be derived from the polyphasic rise of the chlorophyll a fluorescence transient (OJIP)? S Afr J Bot 62 (6): 337--341

Vredenberg WJ (2000) A 3-state model for energy trapping and fluorescence in PSII incorporating radical pair recombination. Biophys J 79: 26--38